1. Common sample types
Secretions, blood, spleen, tonsils, kidneys and lymph nodes samples
2.1 Methods of Pretreatment of samples
2.1.1 Samples pretreatment
Tissue Samples: about 1g tissue samples are taken from three different parts of each sample, and then cut and mixed by Surgical scissors, take 0.5g and grinded in a grinder, continue to grind after adding 1.5ml saline water. transferred to a 1.5mL sterilized centrifugal tube after homogenizing. 8000rpm for 2 min, transfer 200 uL supernatant to a 1.5mL sterilized centrifugal tube. The samples are extracted directly on machine ( The Committee of Jiangsu Taizhou Agricultural)
2.1.2 Whole blood sample: Transfer the supernatant (serum) of whole blood after centrifugation to a 1.5mL sterilized centrifugal tube.
Related lab equipments: animal tissue grinder, Handheld Electric Tissue Grinder.
Centrifuge the samples to different levels and take the
supernatant after break the samples by highthrouput tissue breaker or handheld
tissue grinder.
2.2 The storage and transportation of the samples
The samples could be stored at -20℃ for short term, at -70℃ for long term, but no more than 12 months, the samples
should be transported with ice bags and dry ices, avoid repeatedly freeze and thaw.
2.3 DNA Extration
Transfer the pretreated samples to one 96 deep-well plate
prepacked with magnetic beeds reagents, and put the plate on the automated
nucleic acid purification system for DNA extraction.
Automated nucleic acid purification sytem-96 is used
for virus DNA/RNA extraction, related reagent for extraction can be provide in unpacked
or prepacked boxes, 96 high-throughput pipette system can be used for repack of
the unpacked reagents.
3. Preparation of reagents(Reagent preparation
part)
Set the number of PCR tube as N(N=sample amount+1 negtive control+1 positive control; prepare one more for each 7 samples), premix the forward primer, reverse primer, qPCR probe, enzymes, sub-pack the mixed reagents to PCR tubes, for expample
Reagents |
Amounts |
Mix of ASFV qPCR primer and probes |
1.6 uL |
ASFV qPCR Premix |
10 uL |
Extracted DNA |
2 uL |
RNase free H2O |
6.4 uL |
Volume |
20 uL |
Sub-pack the mix using 96 high-throughput pipette system or pipettors.
4. Sampling(sample treatment part)
Take certain amount of extracted DNA, positibe control, negative control, and sub-pack it to certain tubes, mix and short centrifuge.
5. PCR
reaction(PCR part)
5.1 Place the prepared tubes in the
real-time PCR reaction wells;
5.2 Set the channels, sample
information, reaction system to 20μL;
Select the fluorescence
channel: Detect channel to(Reporter Dye)FAM, (Quencher Dye)to NONE, select
None for ABI instruments, but not ROX reference fluorescence.
5.3 Related equipments
BTK-6 Real-time PCR System, BTK-10 ultrafast real-time
PCR system, ABI7500、LightCycler, Bio-Rad, eppendorf
Real-time PCR systems.
6. Results
Read the results according to the guide from ASFV nucleic
acid testing kit.
Relavent equipment and reagents
Cat.No |
Product name |
Remarks |
AU1001-96 |
automated nucleic acid purification system-96 |
96 samples |
AU1001 |
automated nucleic acid purification system-32 |
32 samples |
AU1096A |
96 High-throughput pipette system |
96 samples |
AU52011-96 |
Magnetic beeds DNA/RNA Extraction Kit(Prepacked) |
96 preps |
CK2160 |
Benchtop high-speed centrifuges |
Angular rotors: 24x1.5/2.2ml |
PR7901 |
DNA virus qPCR reaction reagents |
50 preps |
PR7911 |
ASFV Real-time PCR Testing Kit |
48 preps |
BTK-6 |
Real-time PCR system |
96 samples |
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